Package: kidney.epi 1.2.0

kidney.epi: Kidney Functions: Clinical and Epidemiological

Contains kidney care oriented functions. Current version contains functions for calculation of: - Kidney Donor Risk Index and Kidney Donor Profile Index for kidney transplant donors by Rao et al. (2009) <doi:10.1097/TP.0b013e3181ac620b>. - Estimated glomerular filtration rate by CKD-EPI, MDRD and other equations. Citation: Bikbov B. R open source programming code for calculation of the Kidney Donor Profile Index and Kidney Donor Risk Index. Kidney Diseases (2018) 4:269–272 <doi:10.1159/000492427> (the only citation for the whole package).

Authors:Boris Bikbov [aut, cre]

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kidney.epi.pdf |kidney.epi.html✨
kidney.epi/json (API)
NEWS

# Install 'kidney.epi' in R:
install.packages('kidney.epi', repos = c('https://borisbikbov.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • ktx - Sample dataset with kidney transplant patients.

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

15 exports 0.00 score 0 dependencies 12 scripts 185 downloads

Last updated 5 years agofrom:5be7857e54. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 14 2024
R-4.5-winOKSep 14 2024
R-4.5-linuxOKSep 14 2024
R-4.4-winOKSep 14 2024
R-4.4-macOKSep 14 2024
R-4.3-winOKSep 14 2024
R-4.3-macOKSep 14 2024

Exports:egfr.ckdepiegfr.mdrd4egfr.schwartzktx.kdpi.optnktx.kdpi.optn.show.yearsservice.check_obligatory_paramsservice.check_plausibility.ageservice.check_plausibility.creatinineservice.convert_creatinineservice.count_greater_threshholdservice.count_lowerequal_threshholdservice.is.param_possibleservice.singular_or_pluralservice.strict_to_numeric_threshhold_greaterservice.strict_to_numeric_threshhold_lower

Dependencies:

Estimated glomerular filtration rate (eGFR) calculation

Boris Bikbov

Rendered fromgfr.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2020-03-04
Started: 2020-03-04

Kidney transplantation

Boris Bikbov

Rendered fromktx.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2020-03-04
Started: 2018-06-19

Readme and manuals

Help Manual

Help pageTopics
CKD-EPIegfr.ckdepi
Calculate estimated glomerular filtration rate (eGFR) by different equationsegfr.mdrd4
Schwartz (for children only)egfr.schwartz
Kidney functions for R: clinical and epidemiologicalkidney.epi
Sample dataset with kidney transplant patients.ktx
Calculate KDRI and KDPI for deceased kidney donorktx.kdpi.optn
Shows which years are available in the R package for the OPTN mapping table, KDRI scaling factor, etc.ktx.kdpi.optn.show.years
Check whether all obligatory paramenters of a given function are present.service.check_obligatory_params
Check the argument of a given parameter which set by user and stop function if the value set by user is not among the possible values of the argumentservice.check_param_arguments
Check number of parameters and stop function if it exceeds the expected number of parametersservice.check_param_number
Check whether the following variables are numeric and stop function if at least one of them is not numericservice.check_params_numeric
Service functions for data check on biological plausibility and biochemistry conversion which could be applied in any function of the package or externallyservice.check_plausibility.age
Check and modify if necessary the creatinine values.service.check_plausibility.creatinine
Convert creatinine values if necessary (depending on the mesurement units).service.convert_creatinine
Count how many values are greater than the defined threshhold.service.count_greater_threshhold
Count how many values are less or equal than the defined threshhold.service.count_lowerequal_threshhold
Check whether a vector is numeric.service.is_numeric
Service functions for data check which could be applied in any function of the package or externallyservice.is.param_possible
Produce message for warning or catservice.output_message
Form output message in singular or plural.service.singular_or_plural
Select only numeric values lower than defined threshholdservice.strict_to_numeric_threshhold_greater
Select only numeric values greater than defined threshhold.service.strict_to_numeric_threshhold_lower